About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_412194_413199_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
412194 - 413199
Intron Length:
1006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
CCCTGCTGACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.2
39.5
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
88
0.86
0.7
80.3
31.7
Minor 5ss
30.4
-2.2
3.2
31.9
42.5
Minor BPS
44.8
-0.3
2.1
59.75
49.5

Associated Gene:

Gene:
FAM214B
Ensembl Gene ID:
ENSAPLG00000027087
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039248
411207 - 419067
7861