Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_41248864_41251096_R

Intron Information:

Intron Rank:

143977

Intron Class:

major

Intron Phase:

Intron Coordinates:

41248864 - 41251096

Intron Length:

2233

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCAGAA

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.7

0.46

1.2

36.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

100

1.12

0.4

100

Minor 5ss

41.4

-1

3.3

55.5

48.7

Minor BPS

64.4

0.53

1.7

84.57

36.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024727

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039517

41248696 - 41253350

4655