About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_41358764_41367160_R

Intron Information:

Intron Rank:
138805
Intron Class:
major
Intron Phase:
Intron Coordinates:
41358764 - 41367160
Intron Length:
8397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
GTTTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.7
41.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.8
0.85
0.8
85.7
33.4
Minor 5ss
33.8
-1.8
3
39
41.4
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022185
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035020
41357672 - 41367386
9715