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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_414462_415327_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
414462 - 415327
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
ATGTCCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GATGCCCTAACA
Flanking Amino Acid:
FWNHLLPAAKSSEDCTAVGR
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
76.5
0.6
0.9
66.7
40
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
60.2
0.32
1.8
70.48
41.1

Associated Gene:

Gene:
FAM214B
Ensembl Gene ID:
ENSAPLG00000027087
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039248
411207 - 419067
7861
ENSAPLT00000033902
412896 - 418211
5316
ENSAPLT00000029453
413200 - 419067
5868