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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_41446778_41446966_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41446778 - 41446966
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTCAATG
Flanking Amino Acid:
RTPYGASIFQSKESSSVLSC
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.1
0.83
0.7
86.1
27.7
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
64.5
0.32
1.5
70.72
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012402
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018281
41446670 - 41522619
75950
ENSAPLT00000012953
41446670 - 41522619
75950