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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_41447044_41447371_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41447044 - 41447371
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTCATATTC
Flanking Amino Acid:
CVLSLKFAYCGKWFVSTGKD
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
100
1.24
0.5
100
0
Major PPT
78.6
0.64
0.8
70.8
39.4
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
52
0.04
1.8
67.59
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012402
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012953
41446670 - 41522619
75950
ENSAPLT00000018281
41446670 - 41522619
75950