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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_41448039_41450034_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41448039 - 41450034
Intron Length:
1996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTGTTTTATCA
Flanking Amino Acid:
VWDLHNQTLVRQFQGHTDGA
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
85.3
0.79
0.9
85.7
33.5
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
61.3
0.35
1.7
74.08
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012402
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012953
41446670 - 41522619
75950
ENSAPLT00000018281
41446670 - 41522619
75950