Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_41465427_41466255_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41465427 - 41466255

Intron Length:

829

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTAATGATACCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

ACTCATTTAATT

Flanking Amino Acid:

TSLKSKEMSLHEKASTPVLK

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.85

0.8

83.1

28.6

Major BPS

90.7

1.01

0.7

19.9

Major PPT

64.7

0.33

1.1

56.4

47.2

Minor 5ss

33.3

-1.9

3.4

45.9

43.7

Minor BPS

60.4

0.41

1.5

72.58

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012402

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018281

41446670 - 41522619

75950

ENSAPLT00000012953

41446670 - 41522619

75950