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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_41471182_41479619_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41471182 - 41479619
Intron Length:
8438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGTCTTTACA
Flanking Amino Acid:
EHHRDREPGTSNSLLVPDSL
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
89.5
0.89
0.7
84
31
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
66.2
0.5
1.7
78.67
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012402
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012953
41446670 - 41522619
75950
ENSAPLT00000018281
41446670 - 41522619
75950