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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_41482188_41499248_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41482188 - 41499248
Intron Length:
17061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTACGTGGC
5'SS Class:
major
3'SS Sequence:
GGATGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TATATGAGAAAC
Flanking Amino Acid:
TMAELNAIIGVGATEKCKHS
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
62.9
42.9
Major BPS
68
0.45
1
57.8
39
Major PPT
70
0.45
1
61.9
44.2
Minor 5ss
31.5
-2.1
3.3
34.9
41.5
Minor BPS
38.5
-0.8
2.2
51.52
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012402
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018281
41446670 - 41522619
75950