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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_41500317_41519546_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41500317 - 41519546
Intron Length:
19230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCTCTACA
Flanking Amino Acid:
YGLNIEMHKQTEIAKRLNTI
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.9
0.9
0.6
84.6
23.3
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
69.4
0.6
1.9
84.2
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012402
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012953
41446670 - 41522619
75950
ENSAPLT00000018281
41446670 - 41522619
75950