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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4161748_4162691_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4161748 - 4162691
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TGTGTTTGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GACATTTGAATC
Flanking Amino Acid:
HKGIRKVYTCSHCPDSRRTF
Intron Amino Acid Position:
1092

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
74.1
37.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
73.4
0.53
1
68.8
42.1
Minor 5ss
44.4
-0.6
2.8
60.4
38.3
Minor BPS
47.2
-0.2
1.4
49.24
34.7

Associated Gene:

Gene:
ZNF532
Ensembl Gene ID:
ENSAPLG00000010349
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033095
4159859 - 4203139
43281
ENSAPLT00000041667
4159859 - 4203139
43281
ENSAPLT00000020498
4159859 - 4201308
41450
ENSAPLT00000038563
4159859 - 4203139
43281
ENSAPLT00000010784
4159859 - 4210355
50497
ENSAPLT00000036804
4159859 - 4199251
39393
ENSAPLT00000033848
4159859 - 4203139
43281
ENSAPLT00000046693
4159859 - 4199886
40028