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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4166936_4170622_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4166936 - 4170622
Intron Length:
3687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
QKQLMMDHIKSMHGTLKSVE
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
70.5
41.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.8
0.74
0.8
78.6
34.1
Minor 5ss
35.8
-1.6
2.6
42
44.7
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
ZNF532
Ensembl Gene ID:
ENSAPLG00000010349
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033095
4159859 - 4203139
43281
ENSAPLT00000041667
4159859 - 4203139
43281
ENSAPLT00000020498
4159859 - 4201308
41450
ENSAPLT00000038563
4159859 - 4203139
43281
ENSAPLT00000010784
4159859 - 4210355
50497
ENSAPLT00000036804
4159859 - 4199251
39393
ENSAPLT00000033848
4159859 - 4203139
43281
ENSAPLT00000046693
4159859 - 4199886
40028