Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_417473_418057_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

417473 - 418057

Intron Length:

585

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGCGT

5'SS Class:

major

3'SS Sequence:

AGTCTCCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTATCAC

U12 Branch Point Sequence:

AGTCCTATCACT

Flanking Amino Acid:

RRVLCYLMHLRFHSSKSGKI

Intron Amino Acid Position:

536

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.1

64.3

47.1

Major BPS

0.4

1.1

69.4

35.8

Major PPT

72.1

0.5

0.9

62.4

39.1

Minor 5ss

31.1

-2.2

3.6

47.2

48.2

Minor BPS

48.1

-0

69.74

40.8

Associated Gene:

Gene:

FAM214B

Ensembl Gene ID:

ENSAPLG00000027087

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039248

411207 - 419067

7861

ENSAPLT00000033902

412896 - 418211

5316

ENSAPLT00000029453

413200 - 419067

5868