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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4188593_4201001_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4188593 - 4201001
Intron Length:
12409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTCTGCTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
82.4
0.73
0.9
75.8
37.8
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
58.9
0.36
2
79.24
43.6

Associated Gene:

Gene:
ZNF532
Ensembl Gene ID:
ENSAPLG00000010349
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041667
4159859 - 4203139
43281