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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4188593_4210351_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4188593 - 4210351
Intron Length:
21759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTACA
5'SS Class:
major
3'SS Sequence:
GCTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTCTGCTTATTT
Flanking Amino Acid:
MDLLTIKYMTM
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.3
37.4
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
82.4
0.73
0.9
75.8
37.8
Minor 5ss
41.7
-0.9
2.4
43.6
43.6
Minor BPS
58.9
0.36
2
79.24
43.6

Associated Gene:

Gene:
ZNF532
Ensembl Gene ID:
ENSAPLG00000010349
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010784
4159859 - 4210355
50497