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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4199252_4199837_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4199252 - 4199837
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTACTATGAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.2
0.9
0.6
89.7
25.5
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
48.3
-0
1.7
65.39
38.5

Associated Gene:

Gene:
ZNF532
Ensembl Gene ID:
ENSAPLG00000010349
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046693
4159859 - 4199886
40028