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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42000670_42003346_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42000670 - 42003346
Intron Length:
2677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTCGCA
Flanking Amino Acid:
NIVEAVLHLAREVRKRSDNQ
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.4
37.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
88.6
0.87
0.6
84.5
23.1
Minor 5ss
35.6
-1.6
2.7
43.2
43.8
Minor BPS
49.2
-0
3.6
83.37
37.6

Associated Gene:

Gene:
RASEF
Ensembl Gene ID:
ENSAPLG00000013969
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034705
42000561 - 42035564
35004
ENSAPLT00000014582
42000561 - 42035564
35004