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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42010789_42010886_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42010789 - 42010886
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCAGT
5'SS Class:
major
3'SS Sequence:
TTTGTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATATTTGAATC
Flanking Amino Acid:
RKHISALTPQSGATECTPKY
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
72.7
44.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
46.6
-0.3
2.7
67
43.9
Minor BPS
56.1
0.17
1.4
64.67
34.7

Associated Gene:

Gene:
RASEF
Ensembl Gene ID:
ENSAPLG00000013969
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014582
42000561 - 42035564
35004