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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42010789_42012869_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42010789 - 42012869
Intron Length:
2081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATATTTGAATC
Flanking Amino Acid:
GFGGDASDTDSGATECTPKY
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
77
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
36.4
-1.5
3.2
49.6
39.8
Minor BPS
56.1
0.17
1.4
64.67
34.7

Associated Gene:

Gene:
RASEF
Ensembl Gene ID:
ENSAPLG00000013969
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034705
42000561 - 42035564
35004