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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42023906_42024579_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42023906 - 42024579
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTGA
5'SS Class:
major
3'SS Sequence:
TTTTAAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTACTTTTAAAT
Flanking Amino Acid:
EMETLAIAVKRAQDKAAAQL
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
70
36.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.4
0.64
0.9
75.8
37.9
Minor 5ss
45
-0.5
2.6
58.5
46
Minor BPS
66.1
0.59
1.3
79.29
36.2

Associated Gene:

Gene:
RASEF
Ensembl Gene ID:
ENSAPLG00000013969
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014582
42000561 - 42035564
35004
ENSAPLT00000034705
42000561 - 42035564
35004