About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42129439_42133082_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42129439 - 42133082
Intron Length:
3644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TGTGAATAAATT
Flanking Amino Acid:
KIQREPPEVHRTSITQSRSS
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
79.1
0.65
0.8
76.9
31.8
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
45.4
-0.2
2.1
66.74
43.9

Associated Gene:

Gene:
FRMD3
Ensembl Gene ID:
ENSAPLG00000014312
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014907
42107481 - 42234819
127339