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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42133152_42133718_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42133152 - 42133718
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTAATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTGCTTGAATA
Flanking Amino Acid:
IFFKGSRFRYSGKVAKEVVE
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
76
0.58
1
70.8
38.9
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
65.7
0.49
1.5
75.76
36

Associated Gene:

Gene:
FRMD3
Ensembl Gene ID:
ENSAPLG00000014312
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014907
42107481 - 42234819
127339