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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42133794_42137356_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42133794 - 42137356
Intron Length:
3563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCATCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATC
Flanking Amino Acid:
KCGVENQAFYKYAKSSQIKT
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
82.5
29.7
Major BPS
100
1.24
0.5
100
0
Major PPT
73.1
0.52
1.1
72.4
37.2
Minor 5ss
45.2
-0.5
2.6
59.7
39.1
Minor BPS
57.4
0.21
1.7
68.66
38.1

Associated Gene:

Gene:
FRMD3
Ensembl Gene ID:
ENSAPLG00000014312
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014907
42107481 - 42234819
127339