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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42137446_42138460_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
42137446 - 42138460
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGGTTT
5'SS Class:
major
3'SS Sequence:
TCCCCACAATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCCCCACAATT
Flanking Amino Acid:
TFYVFGAQKEKKAVLTFHTS
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
79.5
36.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
57.6
0.17
0.9
56.4
32.7
Minor 5ss
38.1
-1.3
3.4
56
48.2
Minor BPS
53.3
0.18
1.9
74.93
41.8

Associated Gene:

Gene:
FRMD3
Ensembl Gene ID:
ENSAPLG00000014312
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014907
42107481 - 42234819
127339