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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42138525_42141485_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42138525 - 42141485
Intron Length:
2961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TATACTTAAATT
Flanking Amino Acid:
QGNKRIHLLKWCDVYKLKFE
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.5
41.9
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
89.5
0.89
0.6
89
20.1
Minor 5ss
43.1
-0.8
2.9
54.7
43.7
Minor BPS
61.5
0.44
1.7
77.57
39.2

Associated Gene:

Gene:
FRMD3
Ensembl Gene ID:
ENSAPLG00000014312
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014907
42107481 - 42234819
127339