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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42156344_42168113_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42156344 - 42168113
Intron Length:
11770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTCT
5'SS Class:
major
3'SS Sequence:
AATAATATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTATTTTAATA
Flanking Amino Acid:
EPLKIKEELTRYLLYLQIKR
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.5
33
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.3
0.43
1
63.8
45.8
Minor 5ss
48.3
-0.2
2.6
68.1
42.9
Minor BPS
66.6
0.52
1.3
70.89
36

Associated Gene:

Gene:
FRMD3
Ensembl Gene ID:
ENSAPLG00000014312
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014907
42107481 - 42234819
127339