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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42266317_42267985_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42266317 - 42267985
Intron Length:
1669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTTCCCAAACA
Flanking Amino Acid:
MASGIPLNDEDRIPWLCTLH
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
34.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
87.6
0.85
0.7
81.2
36.5
Minor 5ss
42
-0.9
2.9
59.3
45.1
Minor BPS
61.9
0.37
2
78.72
37.5

Associated Gene:

Gene:
IDNK
Ensembl Gene ID:
ENSAPLG00000017965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043889
42264860 - 42273105
8246
ENSAPLT00000032534
42265570 - 42273105
7536
ENSAPLT00000021269
42265430 - 42273105
7676
ENSAPLT00000014971
42265570 - 42272966
7397