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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42268030_42272035_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42268030 - 42272035
Intron Length:
4006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTATTTGACA
Flanking Amino Acid:
WLCTLHDILRREESSRQDAV
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.8
0.65
1
75.7
37.9
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
66.2
0.5
1.5
75.04
36.5

Associated Gene:

Gene:
IDNK
Ensembl Gene ID:
ENSAPLG00000017965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032534
42265570 - 42273105
7536
ENSAPLT00000021269
42265430 - 42273105
7676
ENSAPLT00000014971
42265570 - 42272966
7397
ENSAPLT00000043889
42264860 - 42273105
8246