About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42279243_42280877_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42279243 - 42280877
Intron Length:
1635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTCTCTTTATCT
Flanking Amino Acid:
RQQLPTFLQQMQNPDTLSAM
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.5
35
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.9
0.63
0.8
77.3
29.8
Minor 5ss
39
-1.2
3.1
47.6
42.4
Minor BPS
66.5
0.6
1.6
79.06
43.7

Associated Gene:

Gene:
UBQLN1
Ensembl Gene ID:
ENSAPLG00000014441
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015048
42276941 - 42303103
26163