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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42280962_42281894_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42280962 - 42281894
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGCA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGGTCTTTAATG
Flanking Amino Acid:
LSQNPDLAVQMMLNNPLFAG
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.4
36.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
84.7
0.78
0.6
81.9
23
Minor 5ss
36
-1.6
3.4
47.9
47.8
Minor BPS
71.1
0.52
1.3
67.66
40.6

Associated Gene:

Gene:
UBQLN1
Ensembl Gene ID:
ENSAPLG00000014441
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015048
42276941 - 42303103
26163