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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4228270_4228945_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4228270 - 4228945
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGTAT
5'SS Class:
major
3'SS Sequence:
TGTTTACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TGTTGTTTACTT
Flanking Amino Acid:
ARNLQWAKAHELPESMYLEF
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
70.1
36.3
Major BPS
76.8
0.67
1
66
40.9
Major PPT
84.1
0.77
0.8
78.1
35.3
Minor 5ss
44.6
-0.6
3.2
60.4
46.7
Minor BPS
54.2
0.21
2
75.88
41.7

Associated Gene:

Gene:
MALT1
Ensembl Gene ID:
ENSAPLG00000010083
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037058
4225547 - 4250938
25392
ENSAPLT00000026365
4225547 - 4250938
25392
ENSAPLT00000010529
4225547 - 4250938
25392