Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42282756_42283394_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42282756 - 42283394

Intron Length:

639

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

CCTTCCTCTGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTAGAT

U12 Branch Point Sequence:

TTGTAGATGATA

Flanking Amino Acid:

EPMLNAAQEQFGGNPFASLV

Intron Amino Acid Position:

288

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

82.1

24.6

Major BPS

0.35

1.2

60.7

45.9

Major PPT

78.4

0.64

0.7

73.3

24.9

Minor 5ss

27.3

-2.6

2.7

30.6

42.8

Minor BPS

42.9

-0.5

2.4

59.88

40.3

Associated Gene:

Gene:

UBQLN1

Ensembl Gene ID:

ENSAPLG00000014441

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015048

42276941 - 42303103

26163