Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42283554_42283713_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42283554 - 42283713

Intron Length:

160

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TCCACTTCCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TTCTTATTAATA

Flanking Amino Acid:

MLNNPDIMRQTLELARNPAM

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

79.7

35.3

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

70.8

0.47

0.8

69.1

31.3

Minor 5ss

41.2

-1

2.5

51.4

45.1

Minor BPS

67.4

0.54

1.5

75.76

35.9

Associated Gene:

Gene:

UBQLN1

Ensembl Gene ID:

ENSAPLG00000014441

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015048

42276941 - 42303103

26163