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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42308577_42310269_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42308577 - 42310269
Intron Length:
1693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTTA
5'SS Class:
major
3'SS Sequence:
CCTTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
ACTACATTAACT
Flanking Amino Acid:
LLQAELTKYQSWKRGKRHLE
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
70.3
36.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
85.5
0.8
0.7
79.5
26.2
Minor 5ss
46.5
-0.4
3.1
64.4
47
Minor BPS
67.2
0.62
1.6
80.72
40.5

Associated Gene:

Gene:
GKAP1
Ensembl Gene ID:
ENSAPLG00000014453
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015091
42308257 - 42325948
17692