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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42310348_42311233_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42310348 - 42311233
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
GTATATTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TACTTTATAAAT
Flanking Amino Acid:
QTIKNELTLQVTTLHAALEQ
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
76.4
0.59
0.9
73.9
41.1
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
52.8
0.17
1.7
70.75
40.1

Associated Gene:

Gene:
GKAP1
Ensembl Gene ID:
ENSAPLG00000014453
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015091
42308257 - 42325948
17692