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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42311305_42312611_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42311305 - 42312611
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
AAATCCTCATGC
Flanking Amino Acid:
QLLNMLQEGEMKDKAEILQQ
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
82.5
0.73
0.7
78.1
30.8
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
46
-0.3
2
55.47
42.2

Associated Gene:

Gene:
GKAP1
Ensembl Gene ID:
ENSAPLG00000014453
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026698
42310813 - 42325886
15074
ENSAPLT00000015091
42308257 - 42325948
17692