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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4231617_4232956_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4231617 - 4232956
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTTT
5'SS Class:
major
3'SS Sequence:
CCTCTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TAGTTCTCAAAA
Flanking Amino Acid:
NVFLLDMCRKRNEYDDTILI
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
74.5
36.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82.2
0.72
0.8
76.7
30.3
Minor 5ss
48.1
-0.2
3.2
72.7
44.5
Minor BPS
56.9
0.21
1.6
65.98
40.1

Associated Gene:

Gene:
MALT1
Ensembl Gene ID:
ENSAPLG00000010083
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026365
4225547 - 4250938
25392
ENSAPLT00000010529
4225547 - 4250938
25392
ENSAPLT00000037058
4225547 - 4250938
25392