Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4233135_4238009_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4233135 - 4238009

Intron Length:

4875

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAACA

5'SS Class:

strong_major

3'SS Sequence:

TTTGATCTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

TTTCAGTTAAAT

Flanking Amino Acid:

FLLLLDRGVYGLLYYAGHGY

Intron Amino Acid Position:

392

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

76.1

32.7

Major BPS

0.65

1.5

85.7

34.9

Major PPT

80.1

0.68

0.9

77.4

36.6

Minor 5ss

33.9

-1.8

2.9

38.9

40.1

Minor BPS

51.9

0.14

2.3

80.16

Associated Gene:

Gene:

MALT1

Ensembl Gene ID:

ENSAPLG00000010083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010529

4225547 - 4250938

25392

ENSAPLT00000037058

4225547 - 4250938

25392

ENSAPLT00000026365

4225547 - 4250938

25392