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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42363054_42367358_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42363054 - 42367358
Intron Length:
4305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAA
U12 Branch Point Sequence:
TTTTTTTTCATC
Flanking Amino Acid:
PSYRDEAVFEEKKVSFYKRA
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
62.1
0.3
1
53.3
33.6
Major PPT
88.8
0.87
0.7
90.1
24.5
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
64.3
0.43
1.7
77
33.7

Associated Gene:

Gene:
C9orf64
Ensembl Gene ID:
ENSAPLG00000020199
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037614
42359801 - 42368460
8660