Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42367619_42368123_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42367619 - 42368123

Intron Length:

505

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTTAGTGCG

5'SS Class:

major

3'SS Sequence:

TACTGTTCTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

ATATCCTAAACA

Flanking Amino Acid:

CAAVNRALDEGIPITSASYY

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.2

61.8

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

67.7

0.4

1.1

67.8

37.7

Minor 5ss

28.9

-2.4

2.8

26.4

Minor BPS

71.8

0.68

1.6

78.87

37.2

Associated Gene:

Gene:

C9orf64

Ensembl Gene ID:

ENSAPLG00000020199

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037614

42359801 - 42368460

8660