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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42371248_42371569_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42371248 - 42371569
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAGAA
U12 Branch Point Sequence:
ATATCAGGAAGT
Flanking Amino Acid:
ITTQVTIPKDLAGSIIGKGG
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
50.4
0.01
1.1
47.3
36.1
Major PPT
80.7
0.69
0.7
74.4
30.8
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
42.3
-0.5
2.4
65.59
44.3

Associated Gene:

Gene:
HNRNPK
Ensembl Gene ID:
ENSAPLG00000010986
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011449
42370265 - 42387544
17280