About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42371752_42375003_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42371752 - 42375003
Intron Length:
3252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TATTCACTAAAG
Flanking Amino Acid:
ACDDMQPPELFEGGSGYDYS
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
85.1
0.79
0.8
79.4
32.6
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
49.9
-0.1
2.1
64.61
42.1

Associated Gene:

Gene:
HNRNPK
Ensembl Gene ID:
ENSAPLG00000010986
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011449
42370265 - 42387544
17280