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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42378926_42379838_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42378926 - 42379838
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTCACTTATTT
Flanking Amino Acid:
PLPPPPPPRGGDLMSYDRRG
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
42.7
Major BPS
100
1.24
0.5
100
0
Major PPT
87.3
0.84
0.7
86.5
26.1
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
56.2
0.27
1.8
75.57
40.9

Associated Gene:

Gene:
HNRNPK
Ensembl Gene ID:
ENSAPLG00000010986
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011449
42370265 - 42387544
17280