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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42380759_42381782_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42380759 - 42381782
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTTC
5'SS Class:
major
3'SS Sequence:
TTCTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
KGAKIKELRENTQTTIKLFQ
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
66.9
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.7
0.76
0.8
81
29.6
Minor 5ss
40.3
-1.1
3.5
59
45.8
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
HNRNPK
Ensembl Gene ID:
ENSAPLG00000010986
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011449
42370265 - 42387544
17280