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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42385114_42386480_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
42385114 - 42386480
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
AACTCTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AACTTCTGAAAA
Flanking Amino Acid:
VELRILLQSKNAGAVIGKGG
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78.5
0.64
0.9
69.5
40.8
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
54
0.12
1.5
61.03
38.4

Associated Gene:

Gene:
HNRNPK
Ensembl Gene ID:
ENSAPLG00000010986
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011449
42370265 - 42387544
17280