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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42386579_42387280_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42386579 - 42387280
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
GACCTCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ACCTCTCTACAG
Flanking Amino Acid:
EETFTNTETNGKRPAEDMEE
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
82.9
29.8
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
72.6
0.51
0.9
64.9
36.1
Minor 5ss
45.6
-0.5
3
63.7
43.1
Minor BPS
41.9
-0.7
1.9
42.99
42.6

Associated Gene:

Gene:
HNRNPK
Ensembl Gene ID:
ENSAPLG00000010986
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011449
42370265 - 42387544
17280