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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4241286_4243935_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4241286 - 4243935
Intron Length:
2650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TCTTGTTTAAAC
Flanking Amino Acid:
QDSKKIEVVVEDLSDLQKTD
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
81.5
0.71
0.8
75.9
32.3
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
60.1
0.3
1.9
70.99
40.7

Associated Gene:

Gene:
MALT1
Ensembl Gene ID:
ENSAPLG00000010083
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037058
4225547 - 4250938
25392