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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4243194_4243935_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4243194 - 4243935
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTAAAACACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TGTCTTCCAATT
Flanking Amino Acid:
QDSKKIEVVVGRKSMAVECT
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
49.2
-0
1.1
44.4
40.2
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
46.8
-0.1
1.8
66.81
38

Associated Gene:

Gene:
MALT1
Ensembl Gene ID:
ENSAPLG00000010083
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026365
4225547 - 4250938
25392
ENSAPLT00000010529
4225547 - 4250938
25392