About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4245841_4246583_R


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
4245841 - 4246583

Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAATAGGG

5'SS Class:
major

3'SS Sequence:
GTGTGTGATTCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AACTAAA

U12 Branch Point Sequence:
TCGTGTGTGATT

Flanking Amino Acid:
HYQWFKQEKEVPYGNSPELV

Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.1
0.66
1
62.7
42.1

Major BPS
68.7
0.47
0.9
67.9
25

Major PPT
66.1
0.36
1.1
62.3
47.7

Minor 5ss
29.9
-2.3
3.3
39
46.1

Minor BPS
43.5
-0.4
2.3
61.34
44

Associated Gene:

Gene:
MALT1

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

4225547 - 4250938
25392

4225547 - 4250938
25392

4225547 - 4250938
25392